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    VP_RS16225 diguanylate cyclase [ Vibrio parahaemolyticus RIMD 2210633 ]

    Gene ID: 1190886, updated on 3-Apr-2024

    Summary

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    Gene symbol
    VP_RS16225
    Gene description
    diguanylate cyclase
    Locus tag
    VP_RS16225
    Gene type
    protein coding
    Organism
    Vibrio parahaemolyticus RIMD 2210633 (strain: RIMD 2210633, substrain: RIMD 2210633)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    VPA0198
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    Genomic context

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    Location:
    chromosome: 2
    Sequence:
    Chromosome: 2; NC_004605.1 (196850..198205)

    Chromosome 2 - NC_004605.1Genomic Context describing neighboring genes Neighboring gene DUF3541 domain-containing protein Neighboring gene alpha-ketoglutarate-dependent dioxygenase AlkB Neighboring gene methyl-accepting chemotaxis protein Neighboring gene DUF3612 domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004605.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel response regulator required for the swarmer-to-stalked-cell transition in Caulobacter crescentus. Hecht GB, et al. J Bacteriol, 1995 Nov. PMID 7592388, Free PMC Article
    2. Genetic data indicate that proteins containing the GGDEF domain possess diguanylate cyclase activity. Ausmees N, et al. FEMS Microbiol Lett, 2001 Oct 16. PMID 11682196
    3. GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Simm R, et al. Mol Microbiol, 2004 Aug. PMID 15306016
    4. Structural basis of activity and allosteric control of diguanylate cyclase. Chan C, et al. Proc Natl Acad Sci U S A, 2004 Dec 7. PMID 15569936, Free PMC Article
    5. A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. Nasu H, et al. J Clin Microbiol, 2000 Jun. PMID 10834969, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    diguanylate cyclase
    WP_005479983.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004605.1 Reference assembly

      Range
      196850..198205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005479983.1 diguanylate cyclase [Vibrio parahaemolyticus]

      See identical proteins and their annotated locations for WP_005479983.1

      UniProtKB/TrEMBL
      A0A0D1VV85, Q87JQ0
      Conserved Domains (2) summary
      cd01949
      Location:295 → 451
      GGDEF; Diguanylate-cyclase (DGC) or GGDEF domain
      cl01369
      Location:23 → 247
      CHASE; CHASE domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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