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    LOC105378379 uncharacterized LOC105378379 [ Homo sapiens (human) ]

    Gene ID: 105378379, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105378379
    Gene description
    uncharacterized LOC105378379
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    10q22.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (78632520..78744543, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (79501743..79613770, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984245 Neighboring gene Sharpr-MPRA regulatory region 14781 Neighboring gene uncharacterized LOC107984246 Neighboring gene uncharacterized LOC105378378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80231795-80232752 Neighboring gene VISTA enhancer hs1491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80303319-80303820 Neighboring gene MPRA-validated peak1025 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:80319111-80320024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80330027-80330528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80330529-80331028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80491819-80492320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80492321-80492820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80516074-80516712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80517352-80517990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80517991-80518628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80527882-80528481 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80536737-80537624 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:80561226-80561763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80587578-80588078 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80611199-80611786 Neighboring gene NANOG hESC enhancer GRCh37_chr10:80619958-80620464 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:80635056-80635704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80660163-80660663 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80670266-80670770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80670771-80671275 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:80673020-80673539 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80673540-80674060 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80675693-80676194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80676195-80676694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80696869-80697391 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80715276-80715991 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80724486-80725046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80727311-80728094 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:80726805-80727304 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80731917-80732848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2521 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80739778-80740278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3620 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:80742018-80742209 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80740279-80740779 Neighboring gene ZMIZ1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80756413-80756912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80768616-80769116 Neighboring gene uncharacterized LOC112268062 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory element GRCh37_chr10:80782948-80783448 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:80806812-80808011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80808619-80809301 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80814153-80814652 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2524 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2525 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80827637-80828482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3623 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80832039-80832542 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80839841-80840350 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2528 Neighboring gene hESC enhancers GRCh37_chr10:80843535-80844106 and GRCh37_chr10:80844107-80844676 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80847474-80848460 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80848461-80849447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80850069-80850570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80850571-80851070 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory elements GRCh37_chr10:80853442-80853942 and GRCh37_chr10:80853471-80853971 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80856811-80857382 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3625 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80862739-80863620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80861855-80862738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80860971-80861854 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:80867111-80867288 Neighboring gene HNF1 motif-containing MPRA enhancer 157 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80872521-80873111 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80873112-80873701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80873702-80874292 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80874293-80874881 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80886414-80886932 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80889167-80889808 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory element GRCh37_chr10:80892363-80892863 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80897004-80897684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80904675-80905613 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2531 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2532 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80915969-80916820 Neighboring gene zinc finger MIZ-type containing 1 Neighboring gene HNF1 motif-containing MPRA enhancer 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80918523-80919372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80922057-80922728 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80930785-80931574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80937580-80938196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80938197-80938813 Neighboring gene Sharpr-MPRA regulatory region 270 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80941281-80941897 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:80943423-80944622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80944822-80945581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80947279-80947814 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80947815-80948349 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80949957-80950491 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80960740-80961240 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80961241-80961741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3629 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80969381-80970255 Neighboring gene VISTA enhancer hs1767 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80984385-80985122 Neighboring gene Sharpr-MPRA regulatory region 8427 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80996160-80996788 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80996789-80997417 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80999304-80999932 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80999933-81000560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:81001601-81002552 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory elements GRCh37_chr10:81003385-81003885 and GRCh37_chr10:81003389-81003889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3633 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory element GRCh37_chr10:81004281-81005113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3634 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3635 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2537 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81007811-81008725 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81008726-81009639 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81015755-81016750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81016751-81017746 Neighboring gene Sharpr-MPRA regulatory region 1120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81023533-81024492 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:81025451-81026410 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:81033176-81034046 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81034047-81034918 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81034919-81035789 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:81039443-81039612 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3639 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory element GRCh37_chr10:81044989-81045489 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr10:81046379-81047029 and GRCh37_chr10:81045728-81046378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2538 Neighboring gene CRISPRi-FlowFISH-validated PPIF regulatory elements GRCh37_chr10:81053513-81054274 and GRCh37_chr10:81053559-81054389 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:81064163-81065362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81071537-81072037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:81072795-81073294

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      78632520..78744543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_946100.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      79501743..79613770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007081380.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases