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    LOC105375138 uncharacterized LOC105375138 [ Homo sapiens (human) ]

    Gene ID: 105375138, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105375138
    Gene description
    uncharacterized LOC105375138
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    7p22.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (6990241..7111275)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (7109407..7230942)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112267992 Neighboring gene uncharacterized LOC107986763 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:7002367-7002866 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:7014635-7015357 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:7030918-7031104 Neighboring gene uncharacterized LOC124901585 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:7041754-7042392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:7050753-7051254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:7081446-7081946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:7081947-7082447 Neighboring gene zinc finger protein 655 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr7:7131844-7132012 Neighboring gene microRNA 3683 Neighboring gene uncharacterized LOC124901584 Neighboring gene CRISPRi-validated cis-regulatory element chr7.922 Neighboring gene CRISPRi-validated cis-regulatory element chr7.924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17961 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17962 Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:7240975-7241493 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25638 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr7:7249044-7249615 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:7249616-7250186 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:7250187-7250758 Neighboring gene uncharacterized LOC107986764 Neighboring gene long intergenic non-protein coding RNA 3016

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      6990241..7111275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_927009.3 RNA Sequence

    2. XR_001745076.2 RNA Sequence

    3. XR_001745075.2 RNA Sequence

    4. XR_927010.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      7109407..7230942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078244.1 RNA Sequence

    2. XR_007078246.1 RNA Sequence

    3. XR_007078243.1 RNA Sequence

    4. XR_007078245.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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