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    parvg.S parvin gamma S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 100036966, updated on 11-Apr-2024

    Summary

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    Official Symbol
    parvg.S
    Official Full Name
    parvin gamma S homeolog
    Primary source
    Xenbase:XB-GENE-996665
    Locus tag
    XELAEV_18019751mg
    See related
    EnsemblRapid:ENSXLAG00005000339
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    parvg
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    Genomic context

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    Location:
    chromosome: 3S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (2200866..2214545, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (2199632..2213393, complement)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 21B S homeolog Neighboring gene protein shisa-like-1 Neighboring gene parvin beta S homeolog Neighboring gene SAMM50 sorting and assembly machinery component S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell projection assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within establishment or maintenance of cell polarity IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    parvin gamma S homeolog
    Names
    parvin, gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097729.1 → NP_001091198.1  parvin gamma S homeolog

      See identical proteins and their annotated locations for NP_001091198.1

      Status: PROVISIONAL

      Source sequence(s)
      BC129728
      UniProtKB/TrEMBL
      A1L2V7
      Related
      ENSXLAP00005000938.1, ENSXLAT00005000969.1
      Conserved Domains (1) summary
      pfam00307
      Location:207 → 307
      CH; Calponin homology (CH) domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      2200866..2214545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041587436.1 → XP_041443370.1  parvin gamma S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8GQC5, A0A974HPV1
      Conserved Domains (2) summary
      cd21305
      Location:40 → 145
      CH_PARVG_rpt1; first calponin homology (CH) domain found in gamma-parvin
      cd21307
      Location:191 → 312
      CH_PARVG_rpt2; second calponin homology (CH) domain found in gamma-parvin
    Nucleotide Protein Strain
    Heading Accession and Version

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