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    lass2 LAG1 homolog, ceramide synthase 2 (S. cerevisiae) [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100195452, updated on 30-Nov-2023

    Summary

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    Gene symbol
    lass2
    Gene description
    LAG1 homolog, ceramide synthase 2 (S. cerevisiae)
    See related
    Ensembl:ENSSSAG00000059839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See lass2 in Genome Data Viewer
    Location:
    chromosome: ssa05
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (74734177..74774415)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa05 NC_027304.1 (69484100..69524490, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012351047.1 (5642..9587)

    Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene ADAMTS-like protein 4 Neighboring gene CUGBP Elav-like family member 3 Neighboring gene aryl hydrocarbon receptor nuclear translocator Neighboring gene uncharacterized LOC123743169

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingosine N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LAG1 homolog, ceramide synthase 2
    Names
    LAG1 longevity assurance homolog 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001140481.1 → NP_001133953.1  LAG1 homolog, ceramide synthase 2

      See identical proteins and their annotated locations for NP_001133953.1

      Status: PROVISIONAL

      Source sequence(s)
      BT045944
      UniProtKB/TrEMBL
      B5X4H5
      Conserved Domains (2) summary
      smart00724
      Location:131 → 259
      TLC; TRAM, LAG1 and CLN8 homology domains
      cd00086
      Location:71 → 128
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059446.1 Reference Ssal_v3.1

      Range
      74734177..74774415
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045717691.1 → XP_045573647.1  LAG1 homolog, ceramide synthase 2 isoform X1

    2. XM_045717692.1 → XP_045573648.1  LAG1 homolog, ceramide synthase 2 isoform X1

    3. XM_045717693.1 → XP_045573649.1  LAG1 homolog, ceramide synthase 2 isoform X1

      Related
      ENSSSAP00000066921.2, ENSSSAT00000098318.2
    Nucleotide Protein
    Heading Accession and Version

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