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    AT4G10950 SGNH hydrolase-type esterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826694, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT4G10950
    Gene description
    SGNH hydrolase-type esterase superfamily protein
    Primary source
    Araport:AT4G10950
    Locus tag
    AT4G10950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F25I24.160; F25I24_160
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    Genomic context

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    See AT4G10950 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (6711386..6713512, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Nuclear transport factor 2 (NTF2) family protein Neighboring gene RING/U-box protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene UDP-D-glucose/UDP-D-galactose 4-epimerase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A GDSL-type esterase/lipase gene, GELP77, is necessary for pollen dissociation and fertility in Arabidopsis. Tsugama D, et al. Biochem Biophys Res Commun, 2020 Jun 11. PMID 32305137
    2. Slowing development restores the fertility of thermo-sensitive male-sterile plant lines. Zhu J, et al. Nat Plants, 2020 Apr. PMID 32231254
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001340696.1
    NM_117164.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SGNH hydrolase-type esterase superfamily protein
    NP_567372.1
    • SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G08460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6711386..6713512 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117164.2 → NP_567372.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567372.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FN43, F4JN67
      Conserved Domains (1) summary
      cd01837
      Location:70 → 384
      SGNH_plant_lipase_like; SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all ...

    2. NM_001340696.1 → NP_001329284.1  SGNH hydrolase-type esterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B785, A0A654FN43
      Conserved Domains (1) summary
      cd01837
      Location:70 → 388
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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