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OT_ostta02g05530 DNA/RNA helicase, DEAD/DEAH box type, N-terminal [ Ostreococcus tauri ]

Gene ID: 9836758, updated on 16-Nov-2023

Summary

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Gene symbol
OT_ostta02g05530
Gene description
DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Locus tag
OT_ostta02g05530
Gene type
protein coding
RNA name
DNA/RNA helicase, DEAD/DEAH box type, N-terminal
RefSeq status
PROVISIONAL
Organism
Ostreococcus tauri (strain: RCC4221)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Old locus tag
Ot02g07750
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_014427.2 (1066349..1070989)

Chromosome 2 - NC_014427.2Genomic Context describing neighboring genes Neighboring gene Fatty acid desaturase, type 1 Neighboring gene Molybdopterin cofactor biosynthesis C (MoaC) domain Neighboring gene unnamed product Neighboring gene Nucleotide sugar dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014427.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
  2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA/RNA helicase, DEAD/DEAH box type, N-terminal

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014427.2 Reference assembly

    Range
    1066349..1070989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003075328.1 → XP_003075376.1  DNA/RNA helicase, DEAD/DEAH box type, N-terminal [Ostreococcus tauri]

    See identical proteins and their annotated locations for XP_003075376.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1Y5HWX7, Q01DF3
    Conserved Domains (7) summary
    smart00847
    Location:1218 → 1301
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:587 → 1525
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:656 → 797
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:1031 → 1147
    Helicase_C; Helicase conserved C-terminal domain
    pfam05773
    Location:446 → 537
    RWD; RWD domain
    pfam07717
    Location:1342 → 1479
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    pfam13894
    Location:41 → 64
    zf-C2H2_4; C2H2-type zinc finger
Nucleotide Protein
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