U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CPC735_017350 WD domain, G-beta repeat containing protein [ Coccidioides posadasii C735 delta SOWgp ]

Gene ID: 9692749, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
CPC735_017350
Gene description
WD domain, G-beta repeat containing protein
Locus tag
CPC735_017350
Gene type
protein coding
RNA name
WD domain, G-beta repeat containing protein
RefSeq status
PROVISIONAL
Organism
Coccidioides posadasii C735 delta SOWgp (strain: C735 delta SOWgp)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Onygenales incertae sedis; Coccidioides
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CPC735_017350 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
5

NW_003315985.1Genomic Context describing neighboring genes Neighboring gene Elongation factor Tu GTP binding domain containing protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene mitochondrial 54S ribosomal protein MRPL51

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003315985.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Sharpton TJ, et al. Genome Res, 2009 Oct. PMID 19717792, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 1 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
WD domain, G-beta repeat containing protein
XP_003067278.1
  • encoded by transcript CPC735_017350A
    contains Pfam profile: PF00400: WD domain, G-beta repeat

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315985.1 Reference assembly

    Range
    1187957..1189690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003067232.1 → XP_003067278.1  WD domain, G-beta repeat containing protein [Coccidioides posadasii C735 delta SOWgp]

    See identical proteins and their annotated locations for XP_003067278.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J6FRA2, C5PDH2, E9D2V7
    Conserved Domains (4) summary
    sd00039
    Location:246 → 278
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:2 → 54
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:67 → 131
    Prp19; Prp19/Pso4-like
    cl29593
    Location:212 → 426
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials