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CPC735_059390 ATP-dependent RNA helicase DBP4, putative [ Coccidioides posadasii C735 delta SOWgp ]

Gene ID: 9692184, updated on 17-May-2024

Summary

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Gene symbol
CPC735_059390
Gene description
ATP-dependent RNA helicase DBP4, putative
Primary source
FungiDB:CPC735_059390
Locus tag
CPC735_059390
Gene type
protein coding
RNA name
ATP-dependent RNA helicase DBP4, putative
RefSeq status
PROVISIONAL
Organism
Coccidioides posadasii C735 delta SOWgp (strain: C735 delta SOWgp)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Onygenales incertae sedis; Coccidioides
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Genomic context

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See CPC735_059390 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_003315979.1Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene DnaJ domain containing protein Neighboring gene amino acid permease, putative Neighboring gene Fungal Zn binuclear cluster domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315979.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Sharpton TJ, et al. Genome Res, 2009 Oct. PMID 19717792, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DBP4, putative
XP_003066714.1
  • encoded by transcript CPC735_059390A
    contains Pfam profile: PF00270: DEAD;DEAH box helicase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315979.1 Reference assembly

    Range
    4794870..4797287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003066668.1 → XP_003066714.1  ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii C735 delta SOWgp]

    See identical proteins and their annotated locations for XP_003066714.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C5PEP9, E9D5T9
    Conserved Domains (4) summary
    smart00487
    Location:63 → 255
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:269 → 397
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:50 → 254
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:430 → 489
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
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