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LOC9639399 elongator complex protein 3 [ Selaginella moellendorffii ]

Gene ID: 9639399, updated on 22-Oct-2023

Summary

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Gene symbol
LOC9639399
Gene description
elongator complex protein 3
Locus tag
SELMODRAFT_443492
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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Genomic context

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See LOC9639399 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314295.1 (201218..203398, complement)

NW_003314295.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH 5, mitochondrial-like Neighboring gene elongator complex protein 3 Neighboring gene ABC transporter G family member 39 Neighboring gene uncharacterized LOC112348937 Neighboring gene ABC transporter G family member 39

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003314295 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of elongator holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongator complex protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314295.1 Reference v1.0

    Range
    201218..203398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002977439.2 → XP_002977485.1  elongator complex protein 3

    See identical proteins and their annotated locations for XP_002977485.1

    UniProtKB/TrEMBL
    D8RL87, D8S2N1
    Conserved Domains (4) summary
    cd01335
    Location:107 → 354
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    TIGR01211
    Location:32 → 557
    ELP3; radical SAM enzyme/protein acetyltransferase, ELP3 family
    pfam00583
    Location:504 → 547
    Acetyltransf_1; Acetyltransferase (GNAT) family
    pfam16199
    Location:325 → 403
    Radical_SAM_C; Radical_SAM C-terminal domain
Nucleotide Protein
Heading Accession and Version

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