U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC9637245 MADS-box transcription factor 6 [ Selaginella moellendorffii ]

Gene ID: 9637245, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC9637245
Gene description
MADS-box transcription factor 6
Locus tag
SELMODRAFT_451128
Gene type
protein coding
RefSeq status
MODEL
Organism
Selaginella moellendorffii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
Also known as
mads3; MADS2-2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314286.1 (969497..972993, complement)

NW_003314286.1Genomic Context describing neighboring genes Neighboring gene N-acetylserotonin O-methyltransferase-like protein Neighboring gene uncharacterized LOC112347956 Neighboring gene DELTA-actitoxin-Afr1a Neighboring gene maf-like protein CTC_02076 Neighboring gene probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 Neighboring gene pre-mRNA-splicing factor SYF1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003314286 Unplaced Scaffold Reference v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. How MIKC* MADS-box genes originated and evidence for their conserved function throughout the evolution of vascular plant gametophytes. Kwantes M, et al. Mol Biol Evol, 2012 Jan. PMID 21813465

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
MADS-box transcription factor 6
Names
MADS-domain transcription factor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0

Genomic

  1. NW_003314286.1 Reference v1.0

    Range
    969497..972993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024679603.1 → XP_024535371.1  MADS-box transcription factor 6 isoform X1

    UniProtKB/TrEMBL
    D8RTW8
    Conserved Domains (1) summary
    cd00266
    Location:12 → 94
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  2. XM_024679604.1 → XP_024535372.1  MADS-box transcription factor 6 isoform X2

    UniProtKB/TrEMBL
    D8RTW8, G0KYA1
    Conserved Domains (1) summary
    cd00266
    Location:2 → 84
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials