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SCHCODRAFT_02743816 P-loop containing nucleoside triphosphate hydrolase protein [ Schizophyllum commune H4-8 ]

Gene ID: 9595020, updated on 17-May-2024

Summary

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Gene symbol
SCHCODRAFT_02743816
Gene description
P-loop containing nucleoside triphosphate hydrolase protein
Primary source
FungiDB:SCHCODRAFT_02743816
Locus tag
SCHCODRAFT_02743816
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizophyllum commune H4-8 (strain: H4-8)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum
Old locus tag
SCHCODRAFT_65145
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Genomic context

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See SCHCODRAFT_02743816 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
9

NW_026089539.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene NAD(P)-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026089539.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. Marian IM, et al. mBio, 2022 Jun 28. PMID 35604096, Free PMC Article
  2. Genome sequence of the model mushroom Schizophyllum commune. Ohm RA, et al. Nat Biotechnol, 2010 Sep. PMID 20622885

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
P-loop containing nucleoside triphosphate hydrolase protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_026089539.1 Reference assembly

    Range
    316212..318481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003038951.2 → XP_003038997.1  P-loop containing nucleoside triphosphate hydrolase protein [Schizophyllum commune H4-8]

    See identical proteins and their annotated locations for XP_003038997.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D8PLP5
    Conserved Domains (3) summary
    PTZ00424
    Location:56 → 426
    PTZ00424; helicase 45; Provisional
    cd00079
    Location:275 → 401
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:56 → 261
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein
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