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SCHCODRAFT_02533549 Metallo-dependent hydrolase [ Schizophyllum commune H4-8 ]

Gene ID: 9586551, updated on 17-May-2024

Summary

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Gene symbol
SCHCODRAFT_02533549
Gene description
Metallo-dependent hydrolase
Primary source
FungiDB:SCHCODRAFT_02533549
Locus tag
SCHCODRAFT_02533549
See related
VEuPathDB:SCHCODRAFT_02533549
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizophyllum commune H4-8 (strain: H4-8)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum
Old locus tag
SCHCODRAFT_52752
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Genomic context

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See SCHCODRAFT_02533549 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
6

NW_026089540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DUF254-domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Non-catalytic module family EXPN protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026089540.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune. Marian IM, et al. mBio, 2022 Jun 28. PMID 35604096, Free PMC Article
  2. Genome sequence of the model mushroom Schizophyllum commune. Ohm RA, et al. Nat Biotechnol, 2010 Sep. PMID 20622885

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in guanine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Metallo-dependent hydrolase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_026089540.1 Reference assembly

    Range
    2637396..2639367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003033943.2 → XP_003033989.1  Metallo-dependent hydrolase [Schizophyllum commune H4-8]

    See identical proteins and their annotated locations for XP_003033989.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    D8PXI1
    Conserved Domains (2) summary
    pfam07969
    Location:53 → 400
    Amidohydro_3; Amidohydrolase family
    cl00281
    Location:3 → 457
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
Nucleotide Protein
Heading Accession and Version

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