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VDBG_04129 SSD1 [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9534657, updated on 21-Dec-2023

Summary

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Gene symbol
VDBG_04129
Gene description
SSD1
Locus tag
VDBG_04129
Gene type
protein coding
RNA name
SSD1
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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See VDBG_04129 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_003315035.1Genomic Context describing neighboring genes Neighboring gene conserved hypothetical protein Neighboring gene SSD1 Neighboring gene conserved hypothetical protein Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315035.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
SSD1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315035.1 Reference assembly

    Range
    2153888..2154945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003006130.1 → XP_003006176.1  SSD1 [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003006176.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9SFS5
    Conserved Domains (1) summary
    pfam00773
    Location:48 → 296
    RNB; RNB domain
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials