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VDBG_01138 transcriptional adapter 2 [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9531038, updated on 25-Jan-2024

Summary

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Gene symbol
VDBG_01138
Gene description
transcriptional adapter 2
Locus tag
VDBG_01138
Gene type
protein coding
RNA name
transcriptional adapter 2
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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See VDBG_01138 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
2

NW_003315038.1Genomic Context describing neighboring genes Neighboring gene transmembrane domain-containing protein Neighboring gene galactose-1-phosphate uridylyltransferase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315038.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA-type complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transcriptional adapter 2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315038.1 Reference assembly

    Range
    3757887..3759554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003009409.1 → XP_003009455.1  transcriptional adapter 2 [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003009455.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9S5C1
    Conserved Domains (4) summary
    COG5114
    Location:15 → 525
    COG5114; Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
    cd02335
    Location:19 → 70
    ZZ_ADA2; Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
    pfam00249
    Location:82 → 125
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam04433
    Location:448 → 524
    SWIRM; SWIRM domain
Nucleotide Protein
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