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VDBG_07996 formamidopyrimidine-DNA glycosylase [ Verticillium alfalfae VaMs.102 ]

Gene ID: 9529794, updated on 21-Dec-2023

Summary

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Gene symbol
VDBG_07996
Gene description
formamidopyrimidine-DNA glycosylase
Locus tag
VDBG_07996
Gene type
protein coding
RNA name
formamidopyrimidine-DNA glycosylase
RefSeq status
PROVISIONAL
Organism
Verticillium alfalfae VaMs.102 (strain: VaMs.102)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Verticillium
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Genomic context

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See VDBG_07996 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_003315028.1Genomic Context describing neighboring genes Neighboring gene lactose permease Neighboring gene carboxypeptidase S1 Neighboring gene conserved hypothetical protein Neighboring gene vivid PAS protein VVD

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003315028.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
formamidopyrimidine-DNA glycosylase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003315028.1 Reference assembly

    Range
    573981..575382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003001691.1 → XP_003001737.1  formamidopyrimidine-DNA glycosylase [Verticillium alfalfae VaMs.102]

    See identical proteins and their annotated locations for XP_003001737.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C9SSX1
    Conserved Domains (3) summary
    TIGR00577
    Location:2 → 267
    fpg; DNA-formamidopyrimidine glycosylase
    pfam06831
    Location:132 → 220
    H2TH; Formamidopyrimidine-DNA glycosylase H2TH domain
    cl03119
    Location:1 → 115
    FpgNei_N; N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials