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yhbY ribosome assembly factor YhbY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947688, updated on 19-Sep-2024

Summary

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Official Symbol
yhbY
Official Full Name
ribosome assembly factor YhbY
Primary source
ECOCYC:EG12794
Locus tag
b3180
See related
ASAP:ABE-0010452
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3169
Summary
Similar to IF3 C-terminal RNA binding fold. [More information is available at EcoGene: EG12794]. YhbY was found to associate with the 50S subunit of the ribosome . [More information is available at EcoCyc: EG12794].
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Genomic context

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Sequence:
NC_000913.3 (3327790..3328083)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FtsH Neighboring gene 23S rRNA 2'-O-ribose U2552 methyltransferase Neighboring gene transcription elongation factor GreA Neighboring gene peptidoglycan DD-endopeptidase DacB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The nucleotide sequence of greA, a suppressor gene that restores growth of an Escherichia coli RNA polymerase mutant at high temperature. Sparkowski J, et al. Nucleic Acids Res, 1990 Nov 11. PMID 2243801, Free PMC Article
  2. Gene targeting using randomly inserted group II introns (targetrons) recovered from an Escherichia coli gene disruption library. Yao J, et al. Nucleic Acids Res, 2005. PMID 15947133, Free PMC Article
  3. Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae. Willis MA, et al. Proteins, 2002 Nov 15. PMID 12360533
  4. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
  5. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables preribosome binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within rRNA 5'-end processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ribosomal large subunit assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within ribosomal small subunit assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ribosome assembly factor YhbY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3327790..3328083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417647.1 ribosome assembly factor YhbY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417647.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1NWH1, A0A8S7X8D4
    Conserved Domains (1) summary
    PRK10343
    Location:1 → 97
    PRK10343; ribosome assembly RNA-binding protein YhbY
Nucleotide Protein
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