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ydcF DUF218 domain-containing protein YdcF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946215, updated on 23-Nov-2023

Summary

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Gene symbol
ydcF
Gene description
DUF218 domain-containing protein YdcF
Primary source
ASAP:ABE-0004722
Locus tag
b1414
See related
ECOCYC:EG12110
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1407
Summary
ydcF and ycbC (COG1434) and sanA and yjgQ (COG2949) are four members of the DUF218 superfamily (PF02698). [More information is available at EcoGene: EG12110]. The function of YdcF is unknown. [More information is available at EcoCyc: EG12110].
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Genomic context

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Sequence:
NC_000913.3 (1487235..1488035)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene FMN dependent NADH:quinone oxidoreductase Neighboring gene ATP-dependent 3'->5' RNA helicase HrpA Neighboring gene aldehyde dehydrogenase A Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli. Hagiwara D, et al. J Bacteriol, 2003 Oct. PMID 13129944, Free PMC Article
  2. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
  3. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Chao KL, et al. Proteins, 2008 Jul. PMID 18393394
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DUF218 domain-containing protein YdcF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1487235..1488035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415932.1 DUF218 domain-containing protein YdcF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415932.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A377CUJ4, A0A8S7EH81
    Conserved Domains (1) summary
    COG1434
    Location:1 → 229
    YdcF; Uncharacterized SAM-binding protein YcdF, DUF218 family [General function prediction only]
Nucleotide Protein
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