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ycgV putative autotransporter adhesin YcgV [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945767, updated on 6-Oct-2023

Summary

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Gene symbol
ycgV
Gene description
putative autotransporter adhesin YcgV
Primary source
ASAP:ABE-0004035
Locus tag
b1202
See related
ECOCYC:G6629
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1190
Summary
YcgV is a potential adhesin. [More information is available at EcoCyc: G6629].
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Genomic context

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Sequence:
NC_000913.3 (1253085..1255952, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene dihydroxyacetone kinase subunit K Neighboring gene DNA-binding transcriptional dual regulator DhaR Neighboring gene redox-responsive ATPase YchF Neighboring gene peptidyl-tRNA hydrolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Combined inactivation and expression strategy to study gene function under physiological conditions: application to identification of new Escherichia coli adhesins. Roux A, et al. J Bacteriol, 2005 Feb. PMID 15659678, Free PMC Article
  2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  3. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion involved in biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in outer membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
putative autotransporter adhesin YcgV

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1253085..1255952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415720.1 putative autotransporter adhesin YcgV [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415720.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7RCV5
    Conserved Domains (3) summary
    PRK15313
    Location:53 → 614
    PRK15313; intestinal colonization autotransporter adhesin MisL
    cd01343
    Location:377 → 620
    PL1_Passenger_AT; Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases, ...
    TIGR01414
    Location:512 → 955
    autotrans_barl; outer membrane autotransporter barrel domain
Nucleotide Protein
Heading Accession and Version

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