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yceO DUF2770 domain-containing protein YceO [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945629, updated on 4-Apr-2024

Summary

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Gene symbol
yceO
Gene description
DUF2770 domain-containing protein YceO
Primary source
ASAP:ABE-0003588
Locus tag
b1058
See related
ECOCYC:G6555
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1043
Summary
YceO appears to be involved in biofilm formation. [More information is available at EcoCyc: G6555].
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Genomic context

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Sequence:
NC_000913.3 (1119307..1119447, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YceI Neighboring gene putative cytochrome b561 YceJ Neighboring gene N-methyl-L-tryptophan oxidase Neighboring gene regulator of biofilm formation

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global approaches for finding small RNA and small open reading frame functions. Wassarman KM, et al. J Bacteriol, 2010 Jan. PMID 19854892, Free PMC Article
  2. Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection. Hobbs EC, et al. J Bacteriol, 2010 Jan. PMID 19734312, Free PMC Article
  3. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  4. Small membrane proteins found by comparative genomics and ribosome binding site models. Hemm MR, et al. Mol Microbiol, 2008 Dec. PMID 19121005, Free PMC Article
  5. YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport. Herzberg M, et al. J Bacteriol, 2006 Jan. PMID 16385049, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within response to acidic pH IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
DUF2770 domain-containing protein YceO

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1119307..1119447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415576.1 DUF2770 domain-containing protein YceO [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415576.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A246W584, A0A367DJ10, A0A3Q0MY95, A0A3W5Y0R2, A0A4S1VL01, C3TEF5
    Conserved Domains (1) summary
    pfam10968
    Location:10 → 45
    DUF2770; Protein of unknown function (DUF2770)
Nucleotide Protein
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