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LOC9316635 transcription factor bHLH66 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9316635, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9316635
Gene description
transcription factor bHLH66
Locus tag
ARALYDRAFT_481281
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (2663523..2666562, complement)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At2g24250-like Neighboring gene F-box/kelch-repeat protein At1g64840 Neighboring gene uncharacterized LOC9316636 Neighboring gene uncharacterized LOC110229358

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH66
Names
basic helix-loop-helix family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    2663523..2666562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002880522.2 → XP_002880568.1  transcription factor bHLH66

    See identical proteins and their annotated locations for XP_002880568.1

    UniProtKB/TrEMBL
    D7LHI2
    Conserved Domains (1) summary
    smart00353
    Location:150 → 198
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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