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LOC9314828 replication protein A 32 kDa subunit A [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9314828, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9314828
Gene description
replication protein A 32 kDa subunit A
Locus tag
ARALYDRAFT_900986
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302552.1 (2883110..2885165, complement)

NW_003302552.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL47 Neighboring gene RING-H2 finger protein ATL20 Neighboring gene cytoplasmic 60S subunit biogenesis factor REI1 homolog 2 Neighboring gene glycine-rich cell wall structural protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302552 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication protein A 32 kDa subunit A
Names
ATRPA2/ROR1/RPA2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302552.1 Reference v.1.0 Primary Assembly

    Range
    2883110..2885165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002880542.2 → XP_002880588.1  replication protein A 32 kDa subunit A

    See identical proteins and their annotated locations for XP_002880588.1

    UniProtKB/TrEMBL
    D7LI82
    Conserved Domains (3) summary
    COG5235
    Location:11 → 277
    RFA2; Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
    cd04478
    Location:72 → 165
    RPA2_DBD_D; RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears ...
    pfam08784
    Location:163 → 272
    RPA_C; Replication protein A C terminal
Nucleotide Protein
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