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LOC9312348 AP2-like ethylene-responsive transcription factor SMZ [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9312348, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9312348
Gene description
AP2-like ethylene-responsive transcription factor SMZ
Locus tag
ARALYDRAFT_485918
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302551.1 (17264647..17267895, complement)

NW_003302551.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9314077 Neighboring gene pentatricopeptide repeat-containing protein At3g54980, mitochondrial Neighboring gene uncharacterized LOC110228002 Neighboring gene protein TONNEAU 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302551 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor SMZ

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302551.1 Reference v.1.0 Primary Assembly

    Range
    17264647..17267895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002877964.2 → XP_002878010.1  AP2-like ethylene-responsive transcription factor SMZ

    See identical proteins and their annotated locations for XP_002878010.1

    UniProtKB/TrEMBL
    D7LUZ7
    Conserved Domains (1) summary
    cl00033
    Location:122 → 182
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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