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LOC9307784 ubiquitin carboxyl-terminal hydrolase [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9307784, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9307784
Gene description
ubiquitin carboxyl-terminal hydrolase
Locus tag
ARALYDRAFT_488484
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (6665776..6667640, complement)

NW_003302550.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat/kelch-repeat protein At1g09650 Neighboring gene acetolactate synthase small subunit 1, chloroplastic Neighboring gene conserved oligomeric Golgi complex subunit 1 Neighboring gene FRIGIDA-like protein 1 Neighboring gene uncharacterized LOC9307785 Neighboring gene conserved oligomeric Golgi complex subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase
Names
ubiquitin carboxyl-terminal hydrolase family 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302550.1 Reference v.1.0 Primary Assembly

    Range
    6665776..6667640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021022463.1 → XP_020878122.1  ubiquitin carboxyl-terminal hydrolase

    UniProtKB/TrEMBL
    D7M835
    Conserved Domains (1) summary
    cd09617
    Location:3 → 226
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
Nucleotide Protein
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