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LOC9299423 homeobox-leucine zipper protein HAT2 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9299423, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9299423
Gene description
homeobox-leucine zipper protein HAT2
Locus tag
ARALYDRAFT_494245
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9299423 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302548.1 (273363..275114)

NW_003302548.1Genomic Context describing neighboring genes Neighboring gene transcription factor KUA1 Neighboring gene uncharacterized LOC9301197 Neighboring gene pentatricopeptide repeat-containing protein At5g47360 Neighboring gene uncharacterized LOC9299425 Neighboring gene palmitoyl-protein thioesterase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302548 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HAT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302548.1 Reference v.1.0 Primary Assembly

    Range
    273363..275114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021015545.1 → XP_020871204.1  homeobox-leucine zipper protein HAT2

    UniProtKB/TrEMBL
    D7MPU4
    Conserved Domains (3) summary
    smart00340
    Location:185 → 228
    HALZ; homeobox associated leucin zipper
    smart00389
    Location:129 → 183
    HOX; Homeodomain
    pfam04618
    Location:8 → 91
    HD-ZIP_N; HD-ZIP protein N terminus
Nucleotide Protein
Heading Accession and Version

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