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PAAG_07212 DNA ligase [ Paracoccidioides lutzii Pb01 ]

Gene ID: 9094153, updated on 17-May-2024

Summary

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Gene symbol
PAAG_07212
Gene description
DNA ligase
Primary source
FungiDB:PAAG_07212
Locus tag
PAAG_07212
See related
VEuPathDB:PAAG_07212
Gene type
protein coding
RNA name
DNA ligase
RefSeq status
PROVISIONAL
Organism
Paracoccidioides lutzii Pb01 (strain: Pb01)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Onygenales incertae sedis; Paracoccidioides
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Genomic context

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See PAAG_07212 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_015440968.1Genomic Context describing neighboring genes Neighboring gene glutamate decarboxylase Neighboring gene RINT-1 family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015440968.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis. Desjardins CA, et al. PLoS Genet, 2011 Oct. PMID 22046142, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in base-excision repair, DNA ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via alternative nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA ligase III-XRCC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_015440968.1 Reference assembly

    Range
    519138..521690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002790930.1 → XP_002790976.1  DNA ligase [Paracoccidioides lutzii Pb01]

    See identical proteins and their annotated locations for XP_002790976.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1H8X1
    Conserved Domains (4) summary
    cd07969
    Location:679 → 824
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:413 → 675
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:28 → 825
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:166 → 339
    DNA_ligase_A_N; DNA ligase N terminus
Nucleotide Protein
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