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ROD_p1411 putative serine protease autotransporter [ Citrobacter rodentium ICC168 ]

Gene ID: 8703887, discontinued on 17-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
ROD_p1411
Gene description
putative serine protease autotransporter
Locus tag
ROD_p1411
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Citrobacter rodentium ICC168 (strain: ICC168)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter
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Genomic context

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Location:
plasmid: pCROD1
Sequence:
NC_013717.1 (36627..40730, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013717.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c37427-36657 HMMPfam hit to PF03797, Autotransporter beta-domain, score 9.2e-44 inference = protein motif:PFAM:PF03797
  • Loc: c40592-38337 HMMPfam hit to PF02395, Peptidase S6, IgA endopeptidase, score 0 inference = protein motif:PFAM:PF02395
  • Loc: c40625-40557 1 probable transmembrane helix predicted for ROD_p1411 by TMHMM2.0 at aa 36-58

General protein information

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Names
putative serine protease autotransporter
YP_003368482.1
  • putative autotransporter, member of the serine protease autotransporter of the enterobacteriaceae (SPATE) family

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013717.1 Reference assembly

    Range
    36627..40730 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_003368482.1 putative serine protease autotransporter [Citrobacter rodentium ICC168]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version