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atg6B autophagy protein Apg6 family protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8626417, updated on 17-May-2024

Summary

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Gene symbol
atg6B
Gene description
autophagy protein Apg6 family protein
Primary source
dictyBase:DDB_G0288021
Locus tag
DDB_G0288021
See related
AmoebaDB:DDB_G0288021; VEuPathDB:DDB_G0288021
Gene type
protein coding
RNA name
autophagy protein Apg6 family protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0187740; DDBDRAFT_0220127; DDB_0187740; DDB_0220127
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_007091.3 (985635..988399)

Chromosome 5 - NC_007091.3Genomic Context describing neighboring genes Neighboring gene CMP/dCMP deaminase, zinc-binding domain-containing protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene histidine ammonia-lyase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007091.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables phosphatidylinositol 3-kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein-macromolecule adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to nitrogen starvation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in late endosome to vacuole transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of phosphatidylinositol 3-kinase complex, class III, type I IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of phosphatidylinositol 3-kinase complex, class III, type II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
autophagy protein Apg6 family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007091.3 Reference assembly

    Range
    985635..988399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_631850.1 → XP_636942.1  autophagy protein Apg6 family protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_636942.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q54JI9
    Conserved Domains (1) summary
    pfam04111
    Location:503 → 809
    APG6; Autophagy protein Apg6
Nucleotide Protein
Heading Accession and Version

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