U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DG1080 CHR group protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8623254, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
DG1080
Gene description
CHR group protein
Primary source
dictyBase:DDB_G0281559
Locus tag
DDB_G0281559
See related
AmoebaDB:DDB_G0281559; VEuPathDB:DDB_G0281559
Gene type
protein coding
RNA name
SNF2-related domain-containing protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0214904; DDBDRAFT_0218333; DDB_0214904; DDB_0218333
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_007089.4 (4978870..4981935, complement)

Chromosome 3 - NC_007089.4Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene cytochrome c oxidase assembly protein Neighboring gene GPN-loop GTPase 2 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_007089.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in biological_process ND
No biological Data available
more info
  
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in replication fork processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in nuclear replication fork IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Names
CHR group protein
SNF2-related domain-containing protein
helicase, C-terminal domain-containing protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007089.4 Reference assembly

    Range
    4978870..4981935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_635551.1 → XP_640643.1  SNF2-related domain-containing protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_640643.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q54TE8
    Conserved Domains (3) summary
    smart00487
    Location:341 → 512
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:363 → 492
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:628 → 748
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q54TE8.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials