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cdk9-2 CDK family protein kinase [ Dictyostelium discoideum AX4 ]

Gene ID: 8619101, updated on 17-May-2024

Summary

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Gene symbol
cdk9-2
Gene description
CDK family protein kinase
Primary source
dictyBase:DDB_G0273721
Locus tag
DDB_G0273721
See related
AmoebaDB:DDB_G0273721; VEuPathDB:DDB_G0273721
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0217274; DDBDRAFT_0302428; DDB_0217274; DDB_0302428
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_007088.5 (3321422..3323747, complement)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene trafficking protein particle complex subunit 10 Neighboring gene calcium-binding EF-hand domain-containing protein Neighboring gene CHC group protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  2. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II CTD heptapeptide repeat kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables cyclin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
part_of cyclin/CDK positive transcription elongation factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
CDK family protein kinase
CRK7 subfamily protein kinase
CTD kinase
protein kinase, CMGC group

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    3321422..3323747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_639385.1 → XP_644477.1  hypothetical protein DDB_G0273721 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_644477.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q556Z2, Q86JS9
    Conserved Domains (2) summary
    smart00220
    Location:210 → 508
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd07840
    Location:209 → 508
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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