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rpl15-1 S60 ribosomal protein L15 [ Dictyostelium discoideum AX4 ]

Gene ID: 8618739, updated on 17-May-2024

Summary

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Gene symbol
rpl15-1
Gene description
S60 ribosomal protein L15
Primary source
dictyBase:DDB_G0272893
Locus tag
DDB_G0272893
See related
AmoebaDB:DDB_G0272893; VEuPathDB:DDB_G0272893
Gene type
protein coding
RNA name
S60 ribosomal protein L15
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0202998; DDBDRAFT_0229953; DDB_0202998; DDB_0229953
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_007088.5 (2395262..2396133, complement)

Chromosome 2 - NC_007088.5Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene dolichyl-phosphate mannosyltransferase 2 regulatory subunit Neighboring gene 26S proteasome non-ATPase regulatory subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007088.5

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic profiling of the extracellular matrix (slime sheath) of Dictyostelium discoideum. Huber RJ, et al. Proteomics, 2015 Oct. PMID 26152465
  2. Sequence and analysis of chromosome 2 of Dictyostelium discoideum. Glöckner G, et al. Nature, 2002 Jul 4. PMID 12097910
  3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within translation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in extracellular matrix HDA PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Names
S60 ribosomal protein L15

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007088.5 Reference assembly

    Range
    2395262..2396133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_639972.1 → XP_645064.1  S60 ribosomal protein L15 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_645064.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q556K8, Q558K2, Q86K01
    Conserved Domains (1) summary
    PTZ00026
    Location:1 → 205
    PTZ00026; 60S ribosomal protein L15; Provisional
Nucleotide Protein
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Gene LinkOut

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