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tcp1 chaperonin containing TCP1 alpha subunit [ Dictyostelium discoideum AX4 ]

Gene ID: 8617780, updated on 17-May-2024

Summary

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Gene symbol
tcp1
Gene description
chaperonin containing TCP1 alpha subunit
Primary source
dictyBase:DDB_G0269190
Locus tag
DDB_G0269190
See related
AmoebaDB:DDB_G0269190; VEuPathDB:DDB_G0269190
Gene type
protein coding
RNA name
t-complex polypeptide 1
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0191065; DDBDRAFT_0191128; DDB_0191065; DDB_0191128
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_007087.3 (4885046..4886981)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene DNA polymerase alpha primase subunit Neighboring gene calmodulin-binding protein Neighboring gene WD40 repeat-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Dictyostelium discoideum homologue to Tcp-1 is essential for growth and development. Iijima M, et al. Gene, 1998 Jun 15. PMID 9630545
  2. Proteomic analysis of Legionella-containing phagosomes isolated from Dictyostelium. Shevchuk O, et al. Int J Med Microbiol, 2009 Nov. PMID 19482547
  3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables unfolded protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sorocarp development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of chaperonin-containing T-complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of chaperonin-containing T-complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in phagocytic vesicle HDA PubMed 

General protein information

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Names
chaperonin containing TCP1 alpha subunit
t-complex polypeptide 1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    4885046..4886981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_641715.1 → XP_646807.1  t-complex polypeptide 1 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_646807.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O76126, Q55BM4
    Conserved Domains (2) summary
    cd03335
    Location:10 → 535
    TCP1_alpha; TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    TIGR02340
    Location:6 → 540
    chap_CCT_alpha; T-complex protein 1, alpha subunit
Nucleotide Protein
Heading Accession and Version

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