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DDB_G0271052 CHR group protein [ Dictyostelium discoideum AX4 ]

Gene ID: 8617621, updated on 17-May-2024

Summary

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Gene symbol
DDB_G0271052
Gene description
CHR group protein
Primary source
dictyBase:DDB_G0271052
Locus tag
DDB_G0271052
Gene type
protein coding
RNA name
SNF2-related domain-containing protein
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0216753; DDBDRAFT_0220695; DDB_0216753; DDB_0220695
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_007087.3 (4502537..4512340, complement)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene ABC transporter G family protein Neighboring gene short-chain dehydrogenase/reductase family protein Neighboring gene regulator of chromosome condensation domain-containing protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent activity, acting on DNA IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Names
CHR group protein
SNF2-related domain-containing protein
bromodomain-containing protein
helicase, C-terminal domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    4502537..4512340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_641557.1 → XP_646649.1  SNF2-related domain-containing protein [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_646649.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q55C32
    Conserved Domains (6) summary
    smart00951
    Location:606 → 640
    QLQ; QLQ is named after the conserved Gln, Leu, Gln motif
    COG0513
    Location:1970 → 2321
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00046
    Location:1731 → 1871
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:1714 → 2010
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:2026 → 2140
    Helicase_C; Helicase conserved C-terminal domain
    cl02556
    Location:2550 → 2647
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q55C32.1

Gene LinkOut

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