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serC phosphoserine aminotransferase [ Dictyostelium discoideum AX4 ]

Gene ID: 8617383, updated on 17-May-2024

Summary

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Gene symbol
serC
Gene description
phosphoserine aminotransferase
Primary source
dictyBase:DDB_G0269950
Locus tag
DDB_G0269950
See related
AmoebaDB:DDB_G0269950; VEuPathDB:DDB_G0269950
Gene type
protein coding
RNA name
phosphoserine transaminase
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0190692; DDBDRAFT_0230053; DDB_0190692; DDB_0230053
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_007087.3 (3920593..3921886)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables O-phospho-L-serine:2-oxoglutarate aminotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables O-phospho-L-serine:2-oxoglutarate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables O-phospho-L-serine:2-oxoglutarate aminotransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables pyridoxal phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in L-serine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in L-serine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within serine family amino acid biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Names
phosphoserine aminotransferase
phosphoserine transaminase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    3920593..3921886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_641333.1 → XP_646425.1  phosphoserine transaminase [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_646425.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q55CQ6
    Conserved Domains (2) summary
    COG1932
    Location:9 → 374
    SerC; Phosphoserine aminotransferase [Coenzyme transport and metabolism, Amino acid transport and metabolism]
    PRK05355
    Location:9 → 374
    PRK05355; 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Nucleotide Protein
Heading Accession and Version

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