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vps25 vacuolar protein sorting 25 [ Dictyostelium discoideum AX4 ]

Gene ID: 8616050, updated on 17-May-2024

Summary

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Gene symbol
vps25
Gene description
vacuolar protein sorting 25
Primary source
dictyBase:DDB_G0267708
Locus tag
DDB_G0267708
See related
AmoebaDB:DDB_G0267708; VEuPathDB:DDB_G0267708
Gene type
protein coding
RNA name
vacuolar protein sorting 25
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0189483; DDBDRAFT_0234026; DDB_0189483; DDB_0234026
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_007087.3 (670930..671606, complement)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007087.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Trafficking and developmental signaling: Alix at the crossroads. Mattei S, et al. Eur J Cell Biol, 2006 Sep. PMID 16766083
  2. Proteomics fingerprinting of phagosome maturation and evidence for the role of a Galpha during uptake. Gotthardt D, et al. Mol Cell Proteomics, 2006 Dec. PMID 16926386
  3. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by dictyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables protein homodimerization activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural molecule activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein targeting ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of ESCRT II complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
  
part_of ESCRT II complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in phagocytic vesicle HDA PubMed 

General protein information

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Names
vacuolar protein sorting 25

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    670930..671606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_642153.1 → XP_647245.1  vacuolar protein sorting 25 [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_647245.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q55GD9
    Conserved Domains (1) summary
    pfam05871
    Location:11 → 160
    ESCRT-II; ESCRT-II complex subunit
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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