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Cbr-lgc-40 Protein CBR-LGC-40 [ Caenorhabditis briggsae ]

Gene ID: 8585876, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-lgc-40
Gene description
Protein CBR-LGC-40
Locus tag
CBG_02128
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-lgc-40 in Genome Data Viewer
Location:
chromosome: X
Exon count:
10
Sequence:
Chromosome: X; NC_013491.2 (4442852..4446479, complement)

Chromosome X - NC_013491.2Genomic Context describing neighboring genes Neighboring gene Protein CBG27508 Neighboring gene Protein CBG02127 Neighboring gene Protein CBG27509 Neighboring gene Protein CBG02130

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013491.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular ligand-gated monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-LGC-40
XP_002643883.1
  • C. briggsae CBR-LGC-40 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR018000 (Neurotransmitter-gated ion-channel, conserved site), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013491.2 Reference assembly

    Range
    4442852..4446479 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002643837.1 → XP_002643883.1  Protein CBR-LGC-40 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002643883.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE8ZQI9, A0AAE9FE05, A8WS14
    Conserved Domains (1) summary
    cl27321
    Location:4 → 493
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
Nucleotide Protein
Heading Accession and Version

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