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Cbr-hda-4 Protein CBR-HDA-4 [ Caenorhabditis briggsae ]

Gene ID: 8585593, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-hda-4
Gene description
Protein CBR-HDA-4
Locus tag
CBG_16328
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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Location:
chromosome: X
Exon count:
9
Sequence:
Chromosome: X; NC_013491.2 (1200086..1214517)

Chromosome X - NC_013491.2Genomic Context describing neighboring genes Neighboring gene Protein CBG16007 Neighboring gene Protein CBR-LGC-53 Neighboring gene Protein CBG16327 Neighboring gene Protein CBG16326

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013491.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-HDA-4
XP_002643599.1
  • C. briggsae CBR-HDA-4 protein; contains similarity to Pfam domain PF00850 Histone deacetylase domain contains similarity to Interpro domains IPR000286 (Histone deacetylase superfamily), IPR023801 (Histone deacetylase domain);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013491.2 Reference assembly

    Range
    1200086..1214517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002643553.1 → XP_002643599.1  Protein CBR-HDA-4 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002643599.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8XNN9, Q613L4
    UniProtKB/TrEMBL
    A0AAE8ZPV1
    Conserved Domains (1) summary
    cl17011
    Location:480 → 854
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q613L4.1

Gene LinkOut

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Molecular Biology Databases
Research Materials