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CBG15250 Protein CBG15250 [ Caenorhabditis briggsae ]

Gene ID: 8584959, updated on 30-Nov-2023

Summary

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Gene symbol
CBG15250
Gene description
Protein CBG15250
Locus tag
CBG_15250
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG15250 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_013490.2 (170243..171098)

Chromosome III - NC_013490.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-TAG-267 Neighboring gene Protein CBR-TAG-266 Neighboring gene Protein CBR-GRK-2 Neighboring gene Protein CBG26079

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013490.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytosolic ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG15250
XP_002642966.1
  • contains similarity to Pfam domains PF09377 (SBDS protein C-terminal domain), PF01172 (Shwachman-Bodian-Diamond syndrome (SBDS) protein) contains similarity to Interpro domains IPR019783 (Ribosome maturation protein SBDS, N-terminal), IPR018978 (Ribosome maturation protein SBDS, C-terminal), IPR002140 (Ribosome maturation protein SBDS), IPR018023 (Ribosome maturation protein SBDS, conserved site);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013490.2 Reference assembly

    Range
    170243..171098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002642920.1 → XP_002642966.1  Protein CBG15250 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002642966.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8XLK4
    Conserved Domains (3) summary
    COG1500
    Location:11 → 244
    Sdo1; Ribosome maturation protein Sdo1 [Translation, ribosomal structure and biogenesis]
    pfam01172
    Location:19 → 100
    SBDS; Shwachman-Bodian-Diamond syndrome (SBDS) protein
    pfam09377
    Location:111 → 227
    SBDS_C; SBDS protein C-terminal domain
Nucleotide Protein
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