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Cbr-daf-16 Protein CBR-DAF-16 [ Caenorhabditis briggsae ]

Gene ID: 8582294, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-daf-16
Gene description
Protein CBR-DAF-16
Locus tag
CBG_12825
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-daf-16 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_013489.2 (10514062..10524278)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBG12822 Neighboring gene Protein CBG12823 Neighboring gene Protein CBG12828 Neighboring gene Protein CBG12830

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-DAF-16
XP_002640298.1
  • C. briggsae CBR-DAF-16 protein; contains similarity to Pfam domain PF00250 Fork head domain contains similarity to Interpro domains IPR018122 (Transcription factor, fork head, conserved site), IPR001766 (Transcription factor, fork head);
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    10514062..10524278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002640252.1 → XP_002640298.1  Protein CBR-DAF-16 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002640298.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9J510, A8XFP9
    Conserved Domains (1) summary
    cd00059
    Location:137 → 217
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
Nucleotide Protein
Heading Accession and Version

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