U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cbr-chn-1 Protein CBR-CHN-1 [ Caenorhabditis briggsae ]

Gene ID: 8582062, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
Cbr-chn-1
Gene description
Protein CBR-CHN-1
Locus tag
CBG_12551
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Cbr-chn-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_013489.2 (9438847..9440060, complement)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBG12549 Neighboring gene Protein CBG12550 Neighboring gene Protein CBG12552 Neighboring gene Protein CBG12553

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to misfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Protein CBR-CHN-1
XP_002640067.1
  • C. briggsae CBR-CHN-1 protein; contains similarity to Pfam domains PF00515 (Tetratricopeptide repeat) (2), PF04564 (U-box domain), PF12895 (Anaphase-promoting complex, cyclosome, subunit 3) contains similarity to Interpro domains IPR003613 (U box domain), IPR001440 (Tetratricopeptide TPR-1), IPR019734 (Tetratricopeptide repeat);
    Predicted

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    9438847..9440060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002640021.1 → XP_002640067.1  Protein CBR-CHN-1 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002640067.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8XG08
    Conserved Domains (5) summary
    smart00028
    Location:38 → 70
    TPR; Tetratricopeptide repeats
    pfam04564
    Location:185 → 257
    U-box; U-box domain
    sd00006
    Location:5 → 33
    TPR; TPR repeat [structural motif]
    pfam05941
    Location:25 → 232
    Chordopox_A20R; Chordopoxvirus A20R protein
    pfam13414
    Location:5 → 69
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials