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CBG21340 Protein CBG21340 [ Caenorhabditis briggsae ]

Gene ID: 8581809, updated on 6-Jun-2024

Summary

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Gene symbol
CBG21340
Gene description
Protein CBG21340
Locus tag
CBG_21340
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG21340 in Genome Data Viewer
Location:
chromosome: I
Exon count:
25
Sequence:
Chromosome: I; NC_013489.2 (7943691..7952947)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-RPS-7 Neighboring gene Protein CBG21342 Neighboring gene Protein CBR-DLC-6 Neighboring gene Protein CBG21339 Neighboring gene Protein CBR-WTS-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG21340
XP_002639815.1
  • contains similarity to Pfam domain PF09324 Domain of unknown function (DUF1981) contains similarity to Interpro domains IPR000904 (SEC7-like), IPR015403 (Domain of unknown function DUF1981, SEC7 associated);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    7943691..7952947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002639769.1 → XP_002639815.1  LOW QUALITY PROTEIN: Protein CBG21340 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002639815.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9IZ65, A8XZW3
    Conserved Domains (2) summary
    pfam09324
    Location:955 → 1037
    DUF1981; Domain of unknown function (DUF1981)
    cl00136
    Location:407 → 605
    Sec7; Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor ...
Nucleotide Protein
Heading Accession and Version

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