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Cbr-otub-1 Protein CBR-OTUB-1 [ Caenorhabditis briggsae ]

Gene ID: 8579707, updated on 30-Nov-2023

Summary

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Gene symbol
Cbr-otub-1
Gene description
Protein CBR-OTUB-1
Locus tag
CBG_11576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-otub-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
2
Sequence:
Chromosome: V; NC_013488.2 (14155757..14156670, complement)

Chromosome V - NC_013488.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-DNJ-3 Neighboring gene Protein CBG27213 Neighboring gene Protein CBR-RAP-2 Neighboring gene Protein CBG11578

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013488.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K48-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-OTUB-1
XP_002637711.1
  • C. briggsae CBR-OTUB-1 protein; contains similarity to Pfam domain PF10275 Peptidase C65 Otubain contains similarity to Interpro domains IPR016615 (Ubiquitin thioesterase Otubain), IPR019400 (Peptidase C65, otubain);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013488.2 Reference assembly

    Range
    14155757..14156670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002637665.1 → XP_002637711.1  Protein CBR-OTUB-1 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002637711.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A8XDJ2
    Conserved Domains (1) summary
    pfam10275
    Location:35 → 274
    Peptidase_C65; Peptidase C65 Otubain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8XDJ2.1

Gene LinkOut

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