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Cbr-cyn-11 Protein CBR-CYN-11 [ Caenorhabditis briggsae ]

Gene ID: 8573334, updated on 30-Nov-2023

Summary

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Gene symbol
Cbr-cyn-11
Gene description
Protein CBR-CYN-11
Locus tag
CBG_03161
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-cyn-11 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_013486.2 (7187490..7188578, complement)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-PTR-20 Neighboring gene Protein CBR-RAB-21 Neighboring gene Protein CBG03160 Neighboring gene Protein CBG25556

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-CYN-11
XP_002631335.1
  • C. briggsae CBR-CYN-11 protein; contains similarity to Pfam domain PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD contains similarity to Interpro domains IPR002130 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain), IPR020892 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    7187490..7188578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002631289.1 → XP_002631335.1  Protein CBR-CYN-11 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002631335.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8WSN1
    Conserved Domains (1) summary
    cl00197
    Location:12 → 183
    cyclophilin; cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the ...
Nucleotide Protein
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