U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cbr-snr-3 Protein CBR-SNR-3 [ Caenorhabditis briggsae ]

Gene ID: 8572455, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
Cbr-snr-3
Gene description
Protein CBR-SNR-3
Locus tag
CBG_02671
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Cbr-snr-3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_013486.2 (9249540..9250251)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBG02673 Neighboring gene Protein CBR-RSP-5 Neighboring gene Protein CBG02670 Neighboring gene Protein CBG02668

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Protein CBR-SNR-3
XP_002630940.1
  • C. briggsae CBR-SNR-3 protein; contains similarity to Pfam domain PF01423 LSM domain contains similarity to Interpro domains IPR001163 (Like-Sm ribonucleoprotein (LSM) domain), IPR006649 (Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type);
    Predicted

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    9249540..9250251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002630894.1 → XP_002630940.1  Protein CBR-SNR-3 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002630940.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8WTS4
    Conserved Domains (1) summary
    cd01724
    Location:2 → 88
    Sm_D1; Sm protein D1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases