U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cbr-casy-1 Protein CBR-CASY-1 [ Caenorhabditis briggsae ]

Gene ID: 8572355, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
Cbr-casy-1
Gene description
Protein CBR-CASY-1
Locus tag
CBG_02547
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Cbr-casy-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
11
Sequence:
Chromosome: II; NC_013486.2 (9752637..9762538)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBG02550 Neighboring gene Protein CBG25630 Neighboring gene Protein CBG02546 Neighboring gene Protein CBG02545

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Protein CBR-CASY-1
XP_002630839.1
  • C. briggsae CBR-CASY-1 protein; contains similarity to Pfam domain PF00028 Cadherin domain contains similarity to Interpro domain IPR002126 (Cadherin);
    Predicted

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    9752637..9762538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002630793.1 → XP_002630839.1  Protein CBR-CASY-1 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002630839.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8WU25
    Conserved Domains (3) summary
    cd11304
    Location:147 → 236
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:66 → 140
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
    cl22861
    Location:398 → 512
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases