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Cbr-arl-1 Protein CBR-ARL-1 [ Caenorhabditis briggsae ]

Gene ID: 8571668, updated on 6-Jun-2024

Summary

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Gene symbol
Cbr-arl-1
Gene description
Protein CBR-ARL-1
Locus tag
CBG_00557
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See Cbr-arl-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_013486.2 (4213842..4215781, complement)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBG00555 Neighboring gene Protein CBG00556 Neighboring gene tRNA Neighboring gene tRNA Neighboring gene Protein CBG00558 Neighboring gene tRNA Neighboring gene tRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBR-ARL-1
XP_002630154.1
  • C. briggsae CBR-ARL-1 protein; contains similarity to Pfam domains PF00071 (Ras family), PF09439 (Signal recognition particle receptor beta subunit), PF04670 (Gtr1/RagA G protein conserved region), PF00025 (ADP-ribosylation factor family), PF08477 (Miro-like protein), PF00503 (G-protein alpha subunit) contains similarity to Interpro domains IPR006687 (Small GTPase superfamily, SAR1-type), IPR013684 (Mitochondrial Rho-like), IPR005225 (Small GTP-binding protein domain), IPR001806 (Small GTPase superfamily), IPR003579 (Small GTPase superfamily, Rab type), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR019009 (Signal recognition particle receptor, beta subunit), IPR006689 (Small GTPase superfamily, ARF/SAR type), IPR006762 (Gtr1/RagA G protein), IPR024156 (Small GTPase superfamily, ARF type);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    4213842..4215781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002630108.1 → XP_002630154.1  Protein CBR-ARL-1 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002630154.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9ITQ0, A0AAE9J744, A8WNL4
    Conserved Domains (1) summary
    cd04151
    Location:18 → 175
    Arl1; ADP ribosylation factor 1 (Arf1)
Nucleotide Protein
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