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    RIM13 Rim13p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 855186, updated on 4-Feb-2012
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    Summary

    Gene symbol
    RIM13
    Gene description
    Rim13p
    Primary source
    SGD:S000004763
    Locus tag
    YMR154C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    CPL1
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    Genomic context

    Sequence :
    Chromosome: XIII; NC_001145.3 (565999..568182, complement)
    See RIM13 in MapViewer

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Yim1p Neighboring gene Nup53p Neighboring gene hypothetical protein Neighboring gene Tpp1p

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria. Hoppins S, et al. J Cell Biol, 2011 Oct 17. PMID 21987634.
    2. Vacuolar protein sorting genes regulate mat formation in Saccharomyces cerevisiae by Flo11p-dependent and -independent mechanisms. Sarode N, et al. Eukaryot Cell, 2011 Nov. PMID 21908597.
    3. Absence of mitochondrial translation control proteins extends life span by activating sirtuin-dependent silencing. Caballero A, et al. Mol Cell, 2011 May 6. PMID 21549315.
    4. Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes. Fasolo J, et al. Genes Dev, 2011 Apr 1. PMID 21460040.
    5. New insight into the role of the Cdc34 ubiquitin-conjugating enzyme in cell cycle regulation via Ace2 and Sic1. Cocklin R, et al. Genetics, 2011 Mar. PMID 21196523.

    See all (31) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:35329 BioGRID:31107 ACT1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36632 AIM18    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36693 ANP1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31442 APS1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35861 ARC35    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32864 ARL1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31358 ARP6    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34535 ARP8    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35205 ARP9    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34957 BCY1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31040 BUD31    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:32107 CDC34    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35329 BioGRID:32219 CDC37    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31676 CDC73    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:34955 CKA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35329 BioGRID:35540 CLA4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34387 CMK2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:35329 BioGRID:34439 CYC2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33360 DAM1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33335 DBF2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32898 DER1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34432 DFG16    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:34166 DID2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34131 DID4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34653 DSE3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33205 DST1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36200 EAF3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33453 ELP2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36079 ELP4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35492 ELP6    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32564 EMI1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35099 ERV41    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34635 ESA1    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35329 BioGRID:31223 FRA1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36894 FTR1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35487 GAS1    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:33503 GCN5    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33791 GEF1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34600 GEP3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31364 GEP5    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35676 GIM3    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:36728 GIM4    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:35049 GIM5    BioGRID  PubMed Negative Genetic; Synthetic Growth Defect 
    BioGRID:35329 BioGRID:34442 GLO4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36622 GPI16    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35120 GSF2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33656 GSH1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31115 HAC1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35805 HDA1    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:32347 HDA2    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:36351 HDA3    BioGRID  PubMed Negative Genetic; Synthetic Growth Defect 
    BioGRID:35329 BioGRID:32665 HEK2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:35329 BioGRID:35473 HER2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35204 HOF1    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:33895 HOM6    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35364 HSC82    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:35923 HSP82    BioGRID  PubMed Synthetic Growth Defect; Synthetic Lethality 
    BioGRID:35329 BioGRID:32277 HTA1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32276 HTB1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34392 HTZ1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33026 HXK2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31133 IES1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35621 IES2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31327 IES3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34584 IES4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36621 IKI1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31643 IKI3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33874 ILM1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33848 IME1    BioGRID  PubMed Dosage Rescue 
    BioGRID:35329 BioGRID:34445 IRC23    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34101 IXR1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36125 LGE1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31742 LTE1    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:33742 MAD3    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35329 BioGRID:31741 MAK16    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33539 MAL11    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35532 MCK1    BioGRID  PubMed Phenotypic Enhancement 
    BioGRID:35329 BioGRID:31458 MDL1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34944 MET30    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36836 MET6    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33900 MGM101    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33212 MIG1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31245 MMM1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33579 MNN11    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33921 MNN4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33970 MRP49    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35077 MSC1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35209 MSN2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35011 MUC1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32447 MUS81    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33129 NAB2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:35329 BioGRID:32052 NHP10    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32369 OMS1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33320 PAC10    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:34438 PEP12    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35726 PHO23    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36147 PHO85    BioGRID  PubMed Phenotypic Suppression 
    BioGRID:35329 BioGRID:33223 PIB2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32598 PKC1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32329 PMP3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35766 POR1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35445 PPA2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34747 PRE10    BioGRID  PubMed Two-hybrid 
    BioGRID:35329 BioGRID:35659 PSD1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33189 RAD6    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:31315 RIC1    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:36395 RIM101    BioGRID  PubMed Phenotypic Suppression; Positive Genetic 
    BioGRID:35329 BioGRID:34664 RIM20    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:33203 RIM8    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:32053 RMD1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36679 RML2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36523 RPF1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34127 RPL14A    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33279 RPL26B    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31980 RPP1A    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33408 RTS3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32243 RVB1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32801 RXT2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33953 SAC1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33181 SGF73    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:34437 SHE4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34400 SIN3    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:32692 SLA1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36461 SLT2    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35329 BioGRID:31308 SMF3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33481 SMI1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31299 SNF7    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:35329 BioGRID:35737 SNN1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31016 SNT1    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:35241 SOV1    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35329 BioGRID:36241 SPE3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:30951 STE50    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32517 STP1    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:33885 STR2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35090 TAF8    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35414 TAF9    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35329 BioGRID:32266 TCP1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34506 TFC7    BioGRID  PubMed PCA 
    BioGRID:35329 BioGRID:34220 TGL4    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35329 BioGRID:34385 TLG2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35753 TOM7    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33954 TRP3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32658 URA7    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:32809 VID24    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:31859 VMA1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35928 VMA11    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36214 VMA13    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36702 VMA3    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36678 VMA8    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:37085 VMA9    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34016 VPH2    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34133 VPS1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34528 VPS17    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35831 VPS27    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36439 VPS29    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33606 VPS35    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36346 VPS4    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34468 VPS5    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35128 VPS71    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35046 VPS9    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31601 VRP1    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33003 YGL235W    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:33368 YGR122W    BioGRID  PubMed Positive Genetic 
    BioGRID:35329 BioGRID:36436 YHR009C    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36596 YHR162W    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31469 YKE2    BioGRID  PubMed Negative Genetic; Synthetic Growth Defect 
    BioGRID:35329 BioGRID:34150 YKR018C    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:34227 YKR096W    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:31565 YLR301W    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:37020 YOL013W-A    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:36766 YPT31    BioGRID  PubMed Negative Genetic 
    BioGRID:35329 BioGRID:35264 YTA12    BioGRID  PubMed Negative Genetic 
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    General gene information

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    cysteine-type endopeptidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    protein processing IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    protein processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
    intracellular IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    Rim13p
    NP_013875.1
    • Calpain-like cysteine protease involved in proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans palB
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3

      Range
      565999..568182, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182657.1 → NP_013875.1  Rim13p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q03792
      Conserved Domains (1) summary
      cl00051
      Location:79 – 290
      Blast Score: 146
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006946.2 DAA10049.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q03792.1 GenPept
    Help top of page

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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