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TPH3 Tph3p [ Saccharomyces cerevisiae S288C ]

Gene ID: 853436, updated on 18-Sep-2024

Summary

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Official Symbol
TPH3
Official Full Name
Tph3p
Primary source
SGD:S000003553
Locus tag
YJL016W
See related
AllianceGenome:SGD:S000003553; FungiDB:YJL016W; VEuPathDB:YJL016W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
YJL017W
Summary
Located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: X
Exon count:
1
Sequence:
Chromosome: X; NC_001142.9 (405588..407273)

Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Bbc1p Neighboring gene Mps3p Neighboring gene chaperonin-containing T-complex subunit CCT3 Neighboring gene Mad3p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001142.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and comparison of yeast species to identify genes and regulatory elements. Kellis M, et al. Nature, 2003 May 15. PMID 12748633
  2. Using HHsearch to tackle proteins of unknown function: A pilot study with PH domains. Fidler DR, et al. Traffic, 2016 Nov. PMID 27601190, Free PMC Article
  3. Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii. Brachat S, et al. Genome Biol, 2003. PMID 12844361, Free PMC Article
  4. The rapamycin-sensitive phosphoproteome reveals that TOR controls protein kinase A toward some but not all substrates. Soulard A, et al. Mol Biol Cell, 2010 Oct 1. PMID 20702584, Free PMC Article
  5. Wss1 metalloprotease partners with Cdc48/Doa1 in processing genotoxic SUMO conjugates. Balakirev MY, et al. Elife, 2015 Sep 8. PMID 26349035, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Tph3p
NP_012518.2
  • hypothetical protein; GFP-fusion protein localizes to the cytoplasm; contains two adjacent PH-like domains; conserved in closely related Saccharomyces species

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001142.9 Reference assembly

    Range
    405588..407273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181450.1 → NP_012518.2  TPA: Tph3p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_012518.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VWG2, P47071, P47072, Q86ZR5
    UniProtKB/TrEMBL
    A6ZPV4, C7GSP6, C8ZBJ5, G2WGZ6, N1P8K4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P47072.2

Gene LinkOut

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