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RPL13A ribosomal 60S subunit protein L13A [ Saccharomyces cerevisiae S288C ]

Gene ID: 851477, updated on 18-Sep-2024

Summary

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Official Symbol
RPL13A
Official Full Name
ribosomal 60S subunit protein L13A
Primary source
SGD:S000002240
Locus tag
YDL082W
See related
AllianceGenome:SGD:S000002240; FungiDB:YDL082W; VEuPathDB:YDL082W
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPL13 (ribosomal protein L13). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See RPL13A in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_001136.10 (308424..309388)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase SUB2 Neighboring gene ribosomal 40S subunit protein S16B Neighboring gene ribosomal protein P1A Neighboring gene branched-chain-2-oxoacid decarboxylase THI3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Natural Variation in Lifespans of Single Yeast Cells Is Related to Variation in Cell Size, Ribosomal Protein, and Division Time. Janssens GE, et al. PLoS One, 2016. PMID 27907085, Free PMC Article
  2. Disruption of six Saccharomyces cerevisiae genes from chromosome IV and basic phenotypic analysis of deletion mutants. López MC, et al. Yeast, 1998 Sep 30. PMID 9791891
  3. Tolerance to acetic acid is improved by mutations of the TATA-binding protein gene. An J, et al. Environ Microbiol, 2015 Mar. PMID 24761971
  4. Presence of Not5 and ubiquitinated Rps7A in polysome fractions depends upon the Not4 E3 ligase. Panasenko OO, et al. Mol Microbiol, 2012 Feb. PMID 22243599
  5. Transcription factor substitution during the evolution of fungal ribosome regulation. Hogues H, et al. Mol Cell, 2008 Mar 14. PMID 18342603, Free PMC Article

See all (98) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IC
Inferred by Curator
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytoplasmic translation IC
Inferred by Curator
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal 60S subunit protein L13A
NP_010201.1
  • Ribosomal 60S subunit protein L13A; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13A has a paralog, RPL13B, that arose from the whole genome duplication

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 Reference assembly

    Range
    308424..309388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001180141.1 → NP_010201.1  TPA: ribosomal 60S subunit protein L13A [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_010201.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VRR7, Q12690
    UniProtKB/TrEMBL
    A6ZXP6, B3LGX6, C8Z6M2, N1P7P8
    Conserved Domains (1) summary
    pfam01294
    Location:8 → 175
    Ribosomal_L13e; Ribosomal protein L13e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q12690.1

Gene LinkOut

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