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TAF2 TBP-associated factor 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843733, updated on 7-Sep-2023

Summary

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Gene symbol
TAF2
Gene description
TBP-associated factor 2
Primary source
Araport:AT1G73960
Locus tag
AT1G73960
See related
TAIR:AT1G73960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2P9.17; F2P9_17; TBP-associated factor 2
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Genomic context

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See TAF2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (27804879..27814519, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor family protein Neighboring gene Transmembrane Fragile-X-F-associated protein Neighboring gene obscurin-like protein Neighboring gene CLAVATA3/ESR-RELATED 13 Neighboring gene Phosphoribulokinase / Uridine kinase family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334615.1
NM_001334616.1
NM_106055.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TBP-associated factor 2
NP_001319379.1
  • TBP-associated factor 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_177536.2
  • TBP-associated factor 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 6967 Blast hits to 5425 proteins in 796 species: Archae - 100; Bacteria - 1288; Metazoa - 2650; Fungi - 808; Plants - 323; Viruses - 9; Other Eukaryotes - 1789 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27804879..27814519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106055.5 → NP_177536.2  TBP-associated factor 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177536.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HTS1, Q6SJQ9, Q8LPF0, Q9C9B7
    UniProtKB/TrEMBL
    A0A178W547
    Conserved Domains (1) summary
    cd09839
    Location:24 → 527
    M1_TAF2; TATA binding protein (TBP) associated factor 2

  2. NM_001334615.1 → NP_001319379.1  TBP-associated factor 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W4F6, A0A2H1ZEF1

  3. NM_001334616.1 → NP_001320977.1  TBP-associated factor 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W547, A0A1P8API4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPF0.1

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